Example

>Type I J-protein
MANPQQKDYYGTLGIKKTATADEIRKAFRKLARKYHPDVNPGDKKAEEKFKEISEANDILGDEKKRKIYDQFGFYSDQIDPAAAEAAARQGYAPGAGSPRGGGQQGVPFDFGGFDFSDYQGGGAQQGGGFGGSFRDIFSGIFNQGGGRQPRGPQPGTDLEYQIEVDFWTAIRGGTARLQIQRQEVCPTCHGKASTGGPHACPECHGSGQVTQMGGRMKFNIQCPRCGGSGKVQNACPTCHGDGTVTRSEPLEFRIKAGTRDGQRIRLAGRGNAGTHGGQPGDLYLIIRMGTHPVFQRLGDDIHLTVPVTIAEAALGAKIEVPTIDGRAQLKIPPGTQSGQKLRMRERGVPSATREGQRGDEIVTVEIVVPQLRDERSKEILREFSKLNPEDPREAVFAKV
>Type II J-protein
MAKNYYEELGVKREASADEIKKAYRKLARKYHPDISKEKDAEEKMQAINVAYDTLSNPEKKAEYDQMLDHPQGFNGFGQGAAQGGFDGARFYRQGFTGGEQADFSGFEDLFGRFGAGFGGGQQQYQRQQRSYRGEDQHASIEVDLDIAYHGSTQHITLQIPTINAYGEPEVQRKTLQVKIPKGMKEGQQIRLSGQGQSGINGGANGDLYIEIQYKDTDHVHVEGSDVYLTVDVTPWEAALGQGIEVKTPAGPLHVNLPKNAKQGQQLRLKDKGIPNKTPGHLYLILNIVFPPAHSEKEKEAYQQLAEAFASFEPRSSH
>Type III J-protein
MVDSQDHYSVLQVSPQATPADIKTAFRRLVRQYHPDLNPNNPRAAEAFQKICTAYEVLSNRDRRVIYDHNDGPRSPFVEEPGSVVLQDAQQYFMQGVQKANRRNYATAIADFTQAIHLDKNYLEAYMGRCQARFALGHNREVLQDCDHILSIQPQSAQAFFFRGRSCYRLGHLDLSIESYSQAIALEKDYAQAFYHRGIAYIKVKERLAIRDLQAAASLFRQQGHIGHYQRAIATLKDLNRKPANILLNLPRNGATLATTALTTLPRLLVNPSGAALQVWQSQLPYQSIGISLICAGLAMGCVVGGAHLFAPKPWTVSDSQVMLLSLVAFSSLVLAGSLIRRMVGKGGSWSGDLLVAGSAMLPVGVWAFLSGLAMQLGQIELIALSLFASSFTILGLYSGYTKIGQIAEPIAALAVPTIVMISYGVTALLYRALMLQLV
>Type IV J-protein
MATLGLLVKTELKKPSISAIALNRSNYHTLKKYQKCYKLLGIYKDDKELRTSQIATVGHREAAPEPRNEFSEIAGALKLFINANKKSRREEKENYKNPLQIKKKQFPKIRATQAAENVVKHRVSKISAEKNEQNDNSMFLPFSKKKFGLERTVEEMIQESISKGEFKNLPGFGKPLPDNDIRNPYVDFVTHRLNEVLIDNGCTPKWITLQKEIREEIQTLKESLAKARARFGPYPLDKQESAQWEQAVLDFQKTTEQVNKKIRNFNLLVPIIEKQMFQVDLKRQAEKVLLNGKFRKPVVEPVQRQRSDIFDFLDVLFK


 

NOTE:
(1) Each protein sequence must start with a greater-than symbol (">") in the first column. The words right after the ">" symbol in the single initial line are optional and only used for the purpose of identification and description.

(2) If a query sequence contains any illegal character, wrong results will be obtained.

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